Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DXB87_07860 | Not Available | Positive | 1748632 - 1750737 | 79780.4 |
| rna polymerase sigma-70 factor | DXB87_07865 | Not Available | Positive | 1750891 - 1751454 | 22196.8 |
| fecr family protein | DXB87_07870 | Not Available | Positive | 1751447 - 1752448 | 38367.4 |
| susc/raga family tonb-linked outer membrane protein | DXB87_07875 | Not Available | Positive | 1752639 - 1756022 | 124789.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXB87_07880 | Not Available | Positive | 1756042 - 1757808 | 67217.7 |
| glycoside hydrolase family 92 protein | DXB87_07885 | Not Available | Positive | 1757955 - 1760171 | 84056.4 |
| glycoside hydrolase family 92 protein | DXB87_07890 | Not Available | Positive | 1760199 - 1762472 | 86301.1 |
| glycoside hydrolase family 92 protein | DXB87_07895 | Not Available | Positive | 1762500 - 1764725 | 83332.0 |
| duf4981 domain-containing protein | DXB87_07900 | Not Available | Positive | 1764891 - 1768238 | 127227.0 |
| alpha-l-arabinofuranosidase | DXB87_07905 | Not Available | Negative | 1768788 - 1770767 | 74714.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

