Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lactaldehyde reductase | DXB87_07750 | Not Available | Positive | 1709176 - 1710330 | 40914.0 |
| hybrid sensor histidine kinase/response regulator | DXB87_07755 | Not Available | Negative | 1710492 - 1714631 | 158993.0 |
| tonb-dependent receptor | DXB87_07760 | Not Available | Positive | 1714954 - 1718181 | 118677.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_07765 | Not Available | Positive | 1718192 - 1719976 | 68177.2 |
| hypothetical protein | DXB87_07770 | Not Available | Positive | 1720147 - 1721850 | 65211.2 |
| glycoside hydrolase | DXB87_07780 | Not Available | Positive | 1723651 - 1725960 | 87732.4 |
| duf4832 domain-containing protein | DXB87_07785 | Not Available | Positive | 1726003 - 1727466 | 55921.9 |
| glycosyl hydrolase family 18 | DXB87_07790 | Not Available | Positive | 1727779 - 1730346 | 95990.5 |
| serine acetyltransferase | DXB87_07795 | Not Available | Negative | 1730529 - 1731434 | 32867.4 |
| ribonuclease r | DXB87_07800 | Not Available | Negative | 1731733 - 1733883 | 81636.3 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

