Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyribonucleotide nucleotidyltransferase | DXB87_07700 | Not Available | Positive | 1694357 - 1696540 | 80543.9 |
| iron-containing alcohol dehydrogenase | DXB87_07705 | Not Available | Positive | 1696697 - 1697869 | 42860.9 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | DXB87_07710 | Not Available | Negative | 1697941 - 1699224 | 47049.1 |
| acyl-coa thioesterase | DXB87_07715 | Not Available | Positive | 1699345 - 1699794 | 17192.7 |
| alpha-l-rhamnosidase | DXB87_07720 | Not Available | Positive | 1699935 - 1703351 | 128198.0 |
| arac family transcriptional regulator | DXB87_07725 | Not Available | Negative | 1703437 - 1704330 | 34783.3 |
| rhamnulokinase | DXB87_07730 | Not Available | Positive | 1704493 - 1705971 | 54531.5 |
| l-rhamnose isomerase | DXB87_07735 | Not Available | Positive | 1705978 - 1707231 | 47630.7 |
| l-rhamnose/proton symporter rhat | DXB87_07740 | Not Available | Positive | 1707297 - 1708307 | 36529.5 |
| rhamnulose-1-phosphate aldolase | DXB87_07745 | Not Available | Positive | 1708334 - 1709143 | 30215.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

