Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyd family secretion protein | DXB87_07650 | Not Available | Positive | 1683122 - 1684216 | 40650.8 |
| mfs transporter | DXB87_07655 | Not Available | Positive | 1684221 - 1685861 | 62424.4 |
| arac family transcriptional regulator | DXB87_07660 | Not Available | Positive | 1685899 - 1686771 | 33488.1 |
| fic family protein | DXB87_07665 | Not Available | Negative | 1686903 - 1687712 | 30981.2 |
| Trna-leu | Not Available | Not Available | Positive | 1687888 - 1687971 | Not Available |
| mannose-1-phosphate guanylyltransferase | DXB87_07675 | Not Available | Positive | 1688138 - 1689181 | 39916.6 |
| tonb-dependent receptor | DXB87_07680 | Not Available | Negative | 1689265 - 1691640 | 89102.6 |
| hit family protein | DXB87_07685 | Not Available | Negative | 1691754 - 1692161 | 15103.3 |
| transcription elongation factor grea | DXB87_07690 | Not Available | Negative | 1692215 - 1692679 | 16737.4 |
| duf4369 domain-containing protein | DXB87_07695 | Not Available | Negative | 1692966 - 1694111 | 42484.5 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

