Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXB87_07585 | Not Available | Negative | 1670244 - 1670486 | 9200.0 |
| hypothetical protein | DXB87_07590 | Not Available | Negative | 1670518 - 1671228 | 27369.6 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_07595 | Not Available | Negative | 1671518 - 1673170 | 62805.4 |
| susc/raga family tonb-linked outer membrane protein | DXB87_07600 | Not Available | Negative | 1673239 - 1676454 | 119848.0 |
| duf4974 domain-containing protein | DXB87_07605 | Not Available | Negative | 1676689 - 1677699 | 38539.7 |
| rna polymerase sigma-70 factor | DXB87_07610 | Not Available | Negative | 1677765 - 1678355 | 23078.8 |
| hypothetical protein | DXB87_07615 | Not Available | Negative | 1678381 - 1679046 | 25609.9 |
| sugar o-acetyltransferase | DXB87_07620 | Not Available | Negative | 1679323 - 1679880 | 20767.1 |
| mobilization protein | DXB87_07635 | Not Available | Positive | 1680788 - 1681231 | 17989.9 |
| tolc family protein | DXB87_07645 | Not Available | Positive | 1681745 - 1683070 | 50758.7 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

