Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4831 family protein | DXB87_07425 | Not Available | Positive | 1631736 - 1632776 | 38432.0 |
| phosphatidylserine decarboxylase family protein | DXB87_07440 | Not Available | Positive | 1636200 - 1636886 | 25918.9 |
| cdp-diacylglycerol--serine o-phosphatidyltransferase | DXB87_07445 | Not Available | Positive | 1636927 - 1637631 | 26041.4 |
| duf4834 family protein | DXB87_07450 | Not Available | Positive | 1637686 - 1637973 | 11068.3 |
| nucleoside deaminase | DXB87_07455 | Not Available | Negative | 1637978 - 1638412 | 15717.0 |
| hypothetical protein | DXB87_07460 | Not Available | Negative | 1638416 - 1638649 | 9451.57 |
| endonuclease | DXB87_07465 | Not Available | Positive | 1638723 - 1639091 | 13948.6 |
| biotin--[acetyl-coa-carboxylase] ligase | DXB87_07470 | Not Available | Positive | 1639112 - 1639849 | 28134.2 |
| mate family efflux transporter | DXB87_07475 | Not Available | Positive | 1639846 - 1641162 | 48597.7 |
| ump kinase | DXB87_07480 | Not Available | Positive | 1641234 - 1641944 | 25493.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

