Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DXB87_07375 | Not Available | Negative | 1624016 - 1624654 | 22855.5 |
| porin family protein | DXB87_07380 | Not Available | Negative | 1624780 - 1625310 | 19442.0 |
| hypothetical protein | DXB87_07385 | Not Available | Negative | 1625371 - 1625565 | 7248.88 |
| m23 family peptidase | DXB87_07390 | Not Available | Negative | 1625572 - 1626189 | 22290.2 |
| hypothetical protein | DXB87_07395 | Not Available | Negative | 1626191 - 1626853 | 24618.3 |
| peptidoglycan editing factor pgef | DXB87_07400 | Not Available | Negative | 1626882 - 1627682 | 30007.1 |
| gtpase obge | DXB87_07405 | Not Available | Negative | 1627682 - 1628866 | 44341.5 |
| adenylate kinase | DXB87_07410 | Not Available | Negative | 1628922 - 1629491 | 20777.1 |
| hypoxanthine phosphoribosyltransferase | DXB87_07415 | Not Available | Negative | 1629516 - 1630052 | 20047.4 |
| nad(p)h-hydrate dehydratase | DXB87_07420 | Not Available | Positive | 1630210 - 1631727 | 54782.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

