Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DXB87_07315 | Not Available | Negative | 1608450 - 1609742 | 47349.5 |
| tryptophan--trna ligase | DXB87_07320 | Not Available | Negative | 1609747 - 1610841 | 41335.7 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DXB87_07325 | Not Available | Positive | 1610997 - 1614221 | 120036.0 |
| tlpa family protein disulfide reductase | DXB87_07330 | Not Available | Negative | 1614387 - 1614905 | 19445.8 |
| yaaa family protein | DXB87_07335 | Not Available | Positive | 1615019 - 1615777 | 29543.7 |
| hypothetical protein | DXB87_07340 | Not Available | Negative | 1615842 - 1617125 | 45369.5 |
| tonb-dependent receptor | DXB87_07345 | Not Available | Negative | 1617183 - 1619873 | 100528.0 |
| mannose-6-phosphate isomerase | DXB87_07350 | Not Available | Positive | 1620090 - 1621061 | 36813.5 |
| hlyd family secretion protein | DXB87_07365 | Not Available | Positive | 1621774 - 1622766 | 37443.5 |
| hypothetical protein | DXB87_07370 | Not Available | Positive | 1622775 - 1624019 | 47808.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

