Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna threonylcarbamoyladenosine dehydratase | DXB87_07265 | Not Available | Negative | 1588078 - 1588803 | 26842.8 |
| cation:proton antiporter | DXB87_07270 | Not Available | Negative | 1588800 - 1590944 | 80417.5 |
| aspartate-semialdehyde dehydrogenase | DXB87_07275 | Not Available | Positive | 1591134 - 1592144 | 37180.6 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_07280 | Not Available | Negative | 1592535 - 1594562 | 76900.5 |
| tonb-dependent receptor | DXB87_07285 | Not Available | Negative | 1594579 - 1597881 | 123172.0 |
| hybrid sensor histidine kinase/response regulator | DXB87_07290 | Not Available | Positive | 1598293 - 1602231 | 149036.0 |
| beta-glucanase | DXB87_07295 | Not Available | Negative | 1602301 - 1603452 | 43692.8 |
| glycoside hydrolase | DXB87_07300 | Not Available | Negative | 1603493 - 1604485 | 37683.0 |
| duf2264 domain-containing protein | DXB87_07305 | Not Available | Negative | 1604612 - 1606921 | 89339.0 |
| neuraminidase | DXB87_07310 | Not Available | Negative | 1606937 - 1608214 | 48588.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

