Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | DXB87_00420 | Not Available | Negative | 118824 - 120962 | 79235.8 |
| hlyc/corc family transporter | DXB87_00425 | Not Available | Negative | 121065 - 122318 | 47360.6 |
| lps export abc transporter periplasmic protein lptc | DXB87_00430 | Not Available | Negative | 122329 - 122949 | 23805.3 |
| hypothetical protein | DXB87_00435 | Not Available | Negative | 122954 - 124315 | 50305.8 |
| hypothetical protein | DXB87_00440 | Not Available | Negative | 124355 - 125626 | 47157.7 |
| type iii pantothenate kinase | DXB87_00445 | Not Available | Negative | 125616 - 126341 | 26814.8 |
| duf4105 domain-containing protein | DXB87_00450 | Not Available | Positive | 126523 - 127731 | 46753.0 |
| alkaline phosphatase family protein | DXB87_00455 | Not Available | Positive | 127731 - 129314 | 59885.5 |
| preprotein translocase subunit seca | DXB87_00460 | Not Available | Positive | 129404 - 132700 | 125245.0 |
| tetratricopeptide repeat protein | DXB87_00465 | Not Available | Positive | 132845 - 133834 | 36455.3 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

