Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na(+)-translocating nadh-quinone reductase subunit a | DXB87_06935 | Not Available | Positive | 1514748 - 1516100 | 49390.8 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit b | DXB87_06940 | Not Available | Positive | 1516126 - 1517301 | 42504.4 |
| na(+)-translocating nadh-quinone reductase subunit c | DXB87_06945 | Not Available | Positive | 1517316 - 1517996 | 24492.1 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit d | DXB87_06950 | Not Available | Positive | 1518011 - 1518649 | 22950.9 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit e | DXB87_06955 | Not Available | Positive | 1518686 - 1519309 | 22312.3 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit f | DXB87_06960 | Not Available | Positive | 1519328 - 1520596 | 46708.7 |
| hypothetical protein | DXB87_06965 | Not Available | Positive | 1520922 - 1521287 | 13789.6 |
| excinuclease abc subunit uvrb | DXB87_06975 | Not Available | Negative | 1522137 - 1524179 | 78033.9 |
| outer membrane protein assembly factor bamd | DXB87_06980 | Not Available | Positive | 1524333 - 1525169 | 32255.1 |
| rna polymerase rpb6 | DXB87_06985 | Not Available | Positive | 1525198 - 1525533 | 13004.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

