Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3990 domain-containing protein | DXB87_06885 | Not Available | Positive | 1498138 - 1498608 | 18248.9 |
| hypothetical protein | DXB87_06890 | Not Available | Positive | 1498605 - 1498826 | 8474.34 |
| trkh family potassium uptake protein | DXB87_06895 | Not Available | Positive | 1498845 - 1500350 | 55556.9 |
| acyltransferase | DXB87_06900 | Not Available | Negative | 1500417 - 1501304 | 33264.6 |
| agmatine deiminase family protein | DXB87_06905 | Not Available | Negative | 1501301 - 1502338 | 39359.5 |
| translocation/assembly module tamb | DXB87_06910 | Not Available | Negative | 1502351 - 1506916 | 171389.0 |
| na+/h+ antiporter nhac | DXB87_06915 | Not Available | Positive | 1507174 - 1508619 | 51183.0 |
| aminopeptidase | DXB87_06920 | Not Available | Positive | 1508649 - 1510043 | 52538.0 |
| susc/raga family tonb-linked outer membrane protein | DXB87_06925 | Not Available | Positive | 1510182 - 1512932 | 101535.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_06930 | Not Available | Positive | 1512943 - 1514574 | 62072.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

