Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavin reductase family protein | DXB87_06785 | Not Available | Negative | 1477513 - 1478079 | 21217.8 |
| aspartate carbamoyltransferase regulatory subunit | DXB87_06790 | Not Available | Negative | 1478083 - 1478541 | 17358.2 |
| aspartate carbamoyltransferase | DXB87_06795 | Not Available | Negative | 1478570 - 1479511 | 36230.6 |
| penicillin-binding protein | DXB87_06800 | Not Available | Positive | 1479705 - 1482032 | 88531.0 |
| upxy family transcription antiterminator | DXB87_06805 | Not Available | Negative | 1482121 - 1482636 | 20060.7 |
| gdp-l-fucose synthase | DXB87_06810 | Not Available | Negative | 1482642 - 1483760 | 41963.5 |
| gdp-mannose 4,6-dehydratase | DXB87_06815 | Not Available | Negative | 1483777 - 1484871 | 41245.1 |
| hypothetical protein | DXB87_06820 | Not Available | Negative | 1484964 - 1485407 | 17061.4 |
| hypothetical protein | DXB87_06825 | Not Available | Negative | 1485423 - 1486910 | 56350.9 |
| chain-length determining protein | DXB87_06830 | Not Available | Negative | 1486927 - 1488027 | 41281.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

