Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s9 family peptidase | DXB87_06735 | Not Available | Negative | 1464811 - 1466901 | 78877.9 |
| ion transporter | DXB87_06740 | Not Available | Negative | 1466961 - 1467851 | 34160.3 |
| membrane protein insertase yidc | DXB87_06745 | Not Available | Negative | 1467987 - 1469846 | 71412.2 |
| ctp synthase | DXB87_06750 | Not Available | Negative | 1469876 - 1471474 | 60032.2 |
| duf3078 domain-containing protein | DXB87_06755 | Not Available | Positive | 1471814 - 1473280 | 56666.3 |
| trimeric intracellular cation channel family protein | DXB87_06760 | Not Available | Positive | 1473309 - 1473926 | 22547.4 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DXB87_06765 | Not Available | Negative | 1473938 - 1474633 | 26829.2 |
| ompa family protein | DXB87_06770 | Not Available | Negative | 1474716 - 1475432 | 24302.8 |
| serine hydroxymethyltransferase | DXB87_06775 | Not Available | Negative | 1475457 - 1476737 | 47048.7 |
| port family protein | DXB87_06780 | Not Available | Negative | 1476768 - 1477505 | 27802.7 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

