Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| [fefe] hydrogenase h-cluster radical sam maturase hyde | DXB87_06685 | Not Available | Negative | 1456706 - 1457752 | 39301.4 |
| 4fe-4s dicluster domain-containing protein | DXB87_06690 | Not Available | Negative | 1457757 - 1459232 | 54785.4 |
| fha domain-containing protein | DXB87_06695 | Not Available | Negative | 1459295 - 1459834 | 20270.3 |
| spor domain-containing protein | DXB87_06700 | Not Available | Negative | 1459854 - 1460978 | 41398.9 |
| duf4738 domain-containing protein | DXB87_06705 | Not Available | Positive | 1461094 - 1461882 | 29540.4 |
| yiha family ribosome biogenesis gtp-binding protein | DXB87_06710 | Not Available | Negative | 1461953 - 1462564 | 23398.3 |
| recombination protein recr | DXB87_06715 | Not Available | Positive | 1462710 - 1463327 | 22521.3 |
| hypothetical protein | DXB87_06720 | Not Available | Positive | 1463340 - 1463801 | 17408.0 |
| n-acetyltransferase | DXB87_06725 | Not Available | Positive | 1463809 - 1464324 | 19122.9 |
| Trna-pro | Not Available | Not Available | Positive | 1464572 - 1464649 | Not Available |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

