Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine zipper family protein | DXB87_06625 | Not Available | Negative | 1440590 - 1441258 | 23598.3 |
| m48 family peptidase | DXB87_06630 | Not Available | Negative | 1441281 - 1442075 | 29002.1 |
| s9 family peptidase | DXB87_06635 | Not Available | Positive | 1442160 - 1444604 | 91364.2 |
| exonuclease sbccd subunit d | DXB87_06640 | Not Available | Positive | 1444610 - 1445824 | 46286.0 |
| hypothetical protein | DXB87_06645 | Not Available | Positive | 1445828 - 1449262 | 130055.0 |
| hypothetical protein | DXB87_06660 | Not Available | Positive | 1450689 - 1451735 | 39356.5 |
| gtp-binding protein | DXB87_06665 | Not Available | Negative | 1451830 - 1453089 | 48360.3 |
| iron-sulfur cluster repair di-iron protein | DXB87_06670 | Not Available | Positive | 1453262 - 1453990 | 27904.7 |
| [fefe] hydrogenase h-cluster maturation gtpase hydf | DXB87_06675 | Not Available | Negative | 1454060 - 1455244 | 43941.5 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | DXB87_06680 | Not Available | Negative | 1455273 - 1456691 | 53870.5 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

