Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ll-diaminopimelate aminotransferase | DXB87_00360 | Not Available | Positive | 106573 - 107808 | 45451.8 |
| hypothetical protein | DXB87_00365 | Not Available | Negative | 108104 - 108811 | 27010.1 |
| hypothetical protein | DXB87_00370 | Not Available | Negative | 108952 - 110184 | 48211.3 |
| hypothetical protein | DXB87_00375 | Not Available | Positive | 110626 - 111171 | 21084.7 |
| duf3795 domain-containing protein | DXB87_00380 | Not Available | Positive | 111164 - 111712 | 21198.3 |
| glutamine synthetase type iii | DXB87_00395 | Not Available | Negative | 112288 - 114477 | 82510.3 |
| ammonium transporter | DXB87_00400 | Not Available | Negative | 114531 - 115925 | 49398.6 |
| p-ii family nitrogen regulator | DXB87_00405 | Not Available | Negative | 115971 - 116327 | 13588.4 |
| hypothetical protein | DXB87_00410 | Not Available | Negative | 116436 - 117137 | 25125.2 |
| hypothetical protein | DXB87_00415 | Not Available | Positive | 117502 - 118722 | 46273.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

