Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroorotate dehydrogenase-like protein | DXB87_06575 | Not Available | Negative | 1429574 - 1430551 | 35728.6 |
| yggs family pyridoxal phosphate-dependent enzyme | DXB87_06580 | Not Available | Negative | 1430565 - 1431233 | 25180.2 |
| duf4494 domain-containing protein | DXB87_06585 | Not Available | Negative | 1431252 - 1431734 | 18232.6 |
| fucose isomerase | DXB87_06590 | Not Available | Negative | 1431815 - 1433053 | 46285.1 |
| pyridoxal phosphate-dependent aminotransferase | DXB87_06595 | Not Available | Positive | 1433258 - 1434460 | 45069.1 |
| abc transporter permease | DXB87_06600 | Not Available | Positive | 1434457 - 1435707 | 46470.9 |
| proline--trna ligase | DXB87_06605 | Not Available | Positive | 1435798 - 1437288 | 56961.1 |
| leucyl/phenylalanyl-trna--protein transferase | DXB87_06610 | Not Available | Negative | 1437365 - 1438006 | 24465.7 |
| aaa family atpase | DXB87_06615 | Not Available | Negative | 1438017 - 1440233 | 83312.9 |
| atp-dependent clp protease adaptor clps | DXB87_06620 | Not Available | Negative | 1440248 - 1440556 | 11843.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

