Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l35 | DXB87_06470 | Not Available | Positive | 1399886 - 1400083 | 7371.38 |
| 50s ribosomal protein l20 | DXB87_06475 | Not Available | Positive | 1400193 - 1400543 | 13195.3 |
| lactonase family protein | DXB87_06480 | Not Available | Positive | 1400933 - 1402087 | 41121.1 |
| ghkl domain-containing protein | DXB87_06485 | Not Available | Negative | 1402105 - 1403388 | 48835.6 |
| sigma-54-dependent fis family transcriptional regulator | DXB87_06490 | Not Available | Negative | 1403376 - 1404746 | 51566.7 |
| tolc family protein | DXB87_06495 | Not Available | Positive | 1404937 - 1406394 | 55946.5 |
| efflux rnd transporter periplasmic adaptor subunit | DXB87_06500 | Not Available | Positive | 1406407 - 1407657 | 47601.3 |
| sel1 repeat family protein | DXB87_06505 | Not Available | Positive | 1407876 - 1408721 | 31741.9 |
| abc transporter permease | DXB87_06510 | Not Available | Positive | 1408777 - 1411155 | 90960.8 |
| abc transporter permease | DXB87_06515 | Not Available | Positive | 1411194 - 1413578 | 92193.8 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

