Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c biogenesis protein cych | DXB87_06410 | Not Available | Positive | 1384135 - 1385112 | 37153.1 |
| duf4145 domain-containing protein | DXB87_06420 | Not Available | Positive | 1386236 - 1386892 | 24734.9 |
| duf4393 domain-containing protein | DXB87_06425 | Not Available | Positive | 1386900 - 1387682 | 29796.0 |
| mate family efflux transporter | DXB87_06435 | Not Available | Positive | 1390946 - 1392319 | 49954.1 |
| glutamine-hydrolyzing gmp synthase | DXB87_06440 | Not Available | Negative | 1392385 - 1393938 | 57783.5 |
| holliday junction resolvase ruvx | DXB87_06445 | Not Available | Positive | 1394125 - 1394541 | 15713.4 |
| peptide deformylase | DXB87_06450 | Not Available | Positive | 1394563 - 1395117 | 20901.4 |
| tetratricopeptide repeat protein | DXB87_06455 | Not Available | Positive | 1395114 - 1397117 | 77823.0 |
| threonine--trna ligase | DXB87_06460 | Not Available | Positive | 1397192 - 1399132 | 74331.3 |
| translation initiation factor if-3 | DXB87_06465 | Not Available | Positive | 1399234 - 1399815 | 22045.8 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

