Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DXB87_00310 | Not Available | Positive | 87687 - 88445 | 29235.6 |
| hypothetical protein | DXB87_00315 | Not Available | Positive | 88591 - 90018 | 51895.6 |
| phosphodiesterase | DXB87_00320 | Not Available | Negative | 90141 - 90680 | 20227.3 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | DXB87_00325 | Not Available | Negative | 90839 - 94396 | 129614.0 |
| atp-binding protein | DXB87_00330 | Not Available | Negative | 94437 - 95615 | 45993.8 |
| amidophosphoribosyltransferase | DXB87_00335 | Not Available | Negative | 95938 - 97821 | 71734.1 |
| glutamate synthase large subunit | DXB87_00340 | Not Available | Positive | 98125 - 102657 | 166880.0 |
| glutamate synthase subunit beta | DXB87_00345 | Not Available | Positive | 102688 - 104031 | 49002.9 |
| asparagine synthase b | DXB87_00350 | Not Available | Positive | 104069 - 105739 | 62701.7 |
| diaminopimelate epimerase | DXB87_00355 | Not Available | Positive | 105754 - 106560 | 29192.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

