Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-cys | Not Available | Not Available | Positive | 1276146 - 1276220 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 1276233 - 1276308 | Not Available |
| gntr family transcriptional regulator | DXB87_05920 | Not Available | Positive | 1276464 - 1277450 | 38093.5 |
| l-fucose isomerase | DXB87_05925 | Not Available | Positive | 1277555 - 1279327 | 65433.9 |
| class ii aldolase/adducin family protein | DXB87_05930 | Not Available | Positive | 1279400 - 1280038 | 23433.4 |
| rhamnulokinase | DXB87_05935 | Not Available | Positive | 1280035 - 1281378 | 49164.1 |
| l-fucose:h+ symporter permease | DXB87_05940 | Not Available | Positive | 1281421 - 1282734 | 48581.2 |
| hypothetical protein | DXB87_05945 | Not Available | Positive | 1282857 - 1283759 | 33909.6 |
| cytochrome c assembly protein | DXB87_05950 | Not Available | Positive | 1283788 - 1284570 | 30021.9 |
| cytochrome b6 | DXB87_05955 | Not Available | Positive | 1284623 - 1286011 | 51081.7 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

