Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | DXB87_05860 | Not Available | Negative | 1264689 - 1266488 | 68018.0 |
| excinuclease abc subunit uvra | DXB87_05865 | Not Available | Positive | 1266684 - 1269521 | 105819.0 |
| cys-trna(pro) deacylase | DXB87_05870 | Not Available | Positive | 1269521 - 1270003 | 17710.7 |
| molecular chaperone djla | DXB87_05875 | Not Available | Positive | 1270030 - 1270815 | 29373.3 |
| hypothetical protein | DXB87_05880 | Not Available | Negative | 1270993 - 1271427 | 17095.6 |
| dicarboxylate/amino acid:cation symporter | DXB87_05885 | Not Available | Negative | 1271461 - 1272636 | 41815.0 |
| gnat family n-acetyltransferase | DXB87_05890 | Not Available | Positive | 1272746 - 1274299 | 59994.8 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DXB87_05895 | Not Available | Negative | 1274365 - 1274940 | 22261.4 |
| glucose-1-phosphate thymidylyltransferase | DXB87_05900 | Not Available | Negative | 1274961 - 1275854 | 33062.9 |
| Trna-cys | Not Available | Not Available | Positive | 1276049 - 1276120 | Not Available |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

