Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXB87_05760 | Not Available | Negative | 1245251 - 1246498 | 44052.9 |
| long-chain fatty acid--coa ligase | DXB87_05765 | Not Available | Negative | 1246510 - 1248168 | 62764.2 |
| alpha-amylase | DXB87_05770 | Not Available | Negative | 1248295 - 1249995 | 65202.8 |
| [acyl-carrier-protein] s-malonyltransferase | DXB87_05775 | Not Available | Negative | 1250109 - 1250996 | 31392.9 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DXB87_05780 | Not Available | Negative | 1251057 - 1251890 | 29229.7 |
| mannose-1-phosphate guanylyltransferase | DXB87_05785 | Not Available | Positive | 1251973 - 1253037 | 40325.4 |
| thiol peroxidase | DXB87_05790 | Not Available | Negative | 1253126 - 1253629 | 17823.7 |
| duf368 domain-containing protein | DXB87_05795 | Not Available | Positive | 1253758 - 1254672 | 33430.9 |
| glutamine--trna ligase/yqey domain fusion protein | DXB87_05800 | Not Available | Negative | 1254936 - 1256675 | 67089.3 |
| replication-associated recombination protein a | DXB87_05805 | Not Available | Positive | 1257133 - 1258407 | 47386.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

