Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DXB87_05710 | Not Available | Positive | 1227141 - 1229129 | 76668.3 |
| susc/raga family tonb-linked outer membrane protein | DXB87_05715 | Not Available | Positive | 1229170 - 1232190 | 112987.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_05720 | Not Available | Positive | 1232209 - 1233972 | 67021.9 |
| hypothetical protein | DXB87_05725 | Not Available | Positive | 1234027 - 1236087 | 75842.8 |
| fructose-1,6-bisphosphatase | DXB87_05730 | Not Available | Negative | 1236240 - 1238237 | 76712.6 |
| putative transporter | DXB87_05735 | Not Available | Negative | 1238261 - 1239922 | 59463.9 |
| glutamine synthetase type iii | DXB87_05740 | Not Available | Negative | 1240084 - 1242273 | 82391.0 |
| ll-diaminopimelate aminotransferase | DXB87_05745 | Not Available | Negative | 1242329 - 1243558 | 45990.2 |
| yitt family protein | DXB87_05750 | Not Available | Positive | 1243716 - 1244603 | 32581.6 |
| crp/fnr family transcriptional regulator | DXB87_05755 | Not Available | Positive | 1244625 - 1245215 | 22729.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

