Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-glucuronidase | DXB87_00260 | Not Available | Positive | 74328 - 76340 | 76474.0 |
| n-acetyltransferase | DXB87_00265 | Not Available | Positive | 76485 - 76787 | 11139.1 |
| sodium:proton antiporter | DXB87_00270 | Not Available | Negative | 76805 - 78946 | 80511.5 |
| o-succinylbenzoic acid--coa ligase | DXB87_00275 | Not Available | Negative | 79031 - 80182 | 42221.1 |
| o-succinylbenzoate synthase | DXB87_00280 | Not Available | Negative | 80184 - 81242 | 39993.1 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DXB87_00285 | Not Available | Negative | 81331 - 82155 | 30464.6 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DXB87_00290 | Not Available | Negative | 82160 - 83824 | 62840.8 |
| isochorismate synthase | DXB87_00295 | Not Available | Negative | 83844 - 84977 | 43098.3 |
| paai family thioesterase | DXB87_00300 | Not Available | Negative | 84974 - 85387 | 14855.1 |
| histidine kinase | DXB87_00305 | Not Available | Positive | 85705 - 87690 | 77904.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

