Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| quinolinate synthase nada | DXB87_05530 | Not Available | Negative | 1186002 - 1186994 | 36683.5 |
| trmh family rna methyltransferase | DXB87_05535 | Not Available | Positive | 1187446 - 1187991 | 20422.8 |
| duf4294 domain-containing protein | DXB87_05540 | Not Available | Negative | 1188045 - 1188650 | 23446.9 |
| helix-hairpin-helix domain-containing protein | DXB87_05545 | Not Available | Positive | 1188806 - 1190773 | 77041.6 |
| stas domain-containing protein | DXB87_05550 | Not Available | Negative | 1190997 - 1192691 | 61136.4 |
| rubrerythrin family protein | DXB87_05555 | Not Available | Positive | 1193039 - 1193617 | 21713.7 |
| phosphopyruvate hydratase | DXB87_05560 | Not Available | Positive | 1193782 - 1195062 | 46160.1 |
| hypothetical protein | DXB87_05565 | Not Available | Negative | 1195324 - 1195779 | 16741.2 |
| hypothetical protein | DXB87_05570 | Not Available | Negative | 1195786 - 1196997 | 45928.3 |
| mobilization protein | DXB87_05585 | Not Available | Negative | 1199966 - 1201033 | 40490.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

