Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXB87_05275 | Not Available | Negative | 1139501 - 1139848 | 13309.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DXB87_05280 | Not Available | Positive | 1139971 - 1141344 | 51869.1 |
| pspc domain-containing protein | DXB87_05285 | Not Available | Negative | 1141550 - 1141750 | 7475.28 |
| class i sam-dependent methyltransferase | DXB87_05290 | Not Available | Positive | 1141890 - 1142786 | 34652.6 |
| cell division protein ftsx | DXB87_05295 | Not Available | Positive | 1142793 - 1143662 | 32595.6 |
| duf3098 domain-containing protein | DXB87_05300 | Not Available | Positive | 1143688 - 1143939 | 9380.9 |
| undecaprenyl-diphosphate phosphatase | DXB87_05305 | Not Available | Positive | 1143945 - 1144748 | 28852.4 |
| trna pseudouridine(55) synthase trub | DXB87_05310 | Not Available | Positive | 1144779 - 1145483 | 26473.2 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | DXB87_05315 | Not Available | Positive | 1145501 - 1146556 | 40342.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DXB87_05320 | Not Available | Positive | 1146568 - 1147026 | 17087.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

