Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4982 domain-containing protein | DXB87_05225 | Not Available | Negative | 1117059 - 1120052 | 112953.0 |
| tonb-dependent receptor | DXB87_05230 | Not Available | Positive | 1120679 - 1123810 | 114995.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_05235 | Not Available | Positive | 1123829 - 1125925 | 78823.9 |
| hypothetical protein | DXB87_05240 | Not Available | Positive | 1126083 - 1129340 | 123494.0 |
| beta-galactosidase | DXB87_05245 | Not Available | Negative | 1129428 - 1131500 | 80069.8 |
| duf4450 domain-containing protein | DXB87_05250 | Not Available | Positive | 1131691 - 1132314 | 23019.4 |
| glycoside hydrolase family 28 protein | DXB87_05255 | Not Available | Positive | 1132311 - 1133750 | 53568.6 |
| rhamnogalacturonan lyase | DXB87_05260 | Not Available | Positive | 1133767 - 1135704 | 71466.7 |
| glycosyl hydrolase | DXB87_05265 | Not Available | Positive | 1135735 - 1137885 | 80583.7 |
| acetyl-coa hydrolase/transferase family protein | DXB87_05270 | Not Available | Negative | 1137961 - 1139457 | 54208.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

