Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenine phosphoribosyltransferase | DXB87_05125 | Not Available | Positive | 1087664 - 1088188 | 19287.6 |
| excinuclease abc subunit uvrc | DXB87_05130 | Not Available | Positive | 1088293 - 1090125 | 70303.5 |
| d-tyrosyl-trna(tyr) deacylase | DXB87_05135 | Not Available | Positive | 1090158 - 1090610 | 16484.1 |
| pyrophosphatase | DXB87_05140 | Not Available | Positive | 1090613 - 1090933 | 12174.5 |
| deoxyribose-phosphate aldolase | DXB87_05145 | Not Available | Positive | 1090939 - 1091880 | 34677.1 |
| polyprenyl synthetase family protein | DXB87_05150 | Not Available | Negative | 1091947 - 1092921 | 35648.9 |
| dna polymerase i | DXB87_05155 | Not Available | Positive | 1093016 - 1095784 | 104574.0 |
| duf3836 domain-containing protein | DXB87_05160 | Not Available | Positive | 1095938 - 1096324 | 15068.1 |
| redox-regulated atpase ychf | DXB87_05165 | Not Available | Positive | 1096526 - 1097629 | 40921.9 |
| ketopantoate reductase family protein | DXB87_05170 | Not Available | Positive | 1097649 - 1098560 | 33103.3 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

