Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | DXB87_05075 | Not Available | Negative | 1074417 - 1076399 | 73475.5 |
| succinate dehydrogenase/fumarate reductase cytochrome b subunit | DXB87_05080 | Not Available | Negative | 1076433 - 1077122 | 25967.5 |
| s41 family peptidase | DXB87_05085 | Not Available | Negative | 1077386 - 1078975 | 59714.3 |
| pantetheine-phosphate adenylyltransferase | DXB87_05090 | Not Available | Negative | 1078991 - 1079446 | 17468.1 |
| type iia dna topoisomerase subunit b | DXB87_05095 | Not Available | Negative | 1079481 - 1081418 | 73273.1 |
| n-acetyltransferase | DXB87_05100 | Not Available | Negative | 1081439 - 1082569 | 43790.3 |
| duf3810 domain-containing protein | DXB87_05105 | Not Available | Negative | 1082885 - 1083847 | 37248.5 |
| hypothetical protein | DXB87_05110 | Not Available | Positive | 1084034 - 1085266 | 44173.2 |
| rrna maturation rnase ybey | DXB87_05115 | Not Available | Positive | 1085275 - 1085697 | 16149.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DXB87_05120 | Not Available | Positive | 1085735 - 1087606 | 69585.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

