Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate-binding protein | DXB87_00210 | Not Available | Positive | 56700 - 58088 | 51850.2 |
| carbohydrate-binding protein | DXB87_00215 | Not Available | Positive | 58147 - 59472 | 50293.1 |
| carbohydrate-binding protein | DXB87_00220 | Not Available | Positive | 59568 - 60905 | 50086.2 |
| duf5110 domain-containing protein | DXB87_00225 | Not Available | Positive | 60922 - 63600 | 100928.0 |
| sialate o-acetylesterase | DXB87_00230 | Not Available | Positive | 63644 - 64513 | 31310.8 |
| response regulator | DXB87_00235 | Not Available | Negative | 64573 - 68754 | 158834.0 |
| sialate o-acetylesterase | DXB87_00240 | Not Available | Positive | 69016 - 70638 | 61425.3 |
| mfs transporter | DXB87_00245 | Not Available | Positive | 70648 - 72144 | 55062.4 |
| 1,4-beta-xylanase | DXB87_00250 | Not Available | Positive | 72160 - 73308 | 43550.2 |
| alpha-n-arabinofuranosidase | DXB87_00255 | Not Available | Positive | 73358 - 74335 | 37085.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

