Rhodococcus jostii RHA1

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus jostii RHA1. This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. This organism may be useful in the bioremediation of contaminated environmental sites. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus jostii
StrainRHA1

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodococcus jostii RHA1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence.

Gene Summary

Adenine Count

79347 bp

Thymine Count

79919 bp

Guanine Count

143453 bp

Cytosine Count

139817 bp

Genome Length

442536 bp

Protein-coding Genes

416 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic-ring-hydroxylating dioxygenase subunit betaRHA1_RS41665Not AvailableNegative193794 - 19426417833.0
aromatic ring-hydroxylating dioxygenase subunit alphaRHA1_RS41670Not AvailableNegative194261 - 19552646685.5
iclr family transcriptional regulator c-terminal domain-containing proteinRHA1_RS41675Not AvailablePositive195691 - 19642525951.4
abc transporter substrate-binding proteinRHA1_RS41685Not AvailablePositive197072 - 19805834509.9
abc transporter atp-binding proteinRHA1_RS41690Not AvailablePositive198073 - 19888529889.0
abc transporter permeaseRHA1_RS41695Not AvailablePositive198882 - 19969129319.1
abc transporter permeaseRHA1_RS41700Not AvailablePositive199688 - 20050328374.6
n-carbamoylsarcosine amidohydrolaseRHA1_RS41705Not AvailablePositive200579 - 20124423781.3
iclr family transcriptional regulatorRHA1_RS41710Not AvailableNegative201292 - 20208628616.3
aromatic ring-hydroxylating dioxygenase subunit alphaRHA1_RS41715Not AvailablePositive202289 - 20371953625.9

Displaying genes 181 – 190 of 9054 in total

Metabolites

1471 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da

Displaying 1–10 of 1471 metabolites

Health Effects

No health effects information available for this bacterium.