Rhodococcus ruber str. YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium predominantly found in soil environments. This microbe is part of the diverse Rhodococcus genus, known for its robust metabolic capabilities and adaptability to various ecological niches. As a soil-dwelling organism, R. ruber str. YYL contributes to the microbial community dynamics and plays a role in nutrient cycling, particularly in the degradation of organic compounds. The Gram-positive nature of R. ruber str. YYL suggests a thick peptidoglycan layer in its cell wall, which may provide structural integrity and protection against environmental stresses. This trait is characteristic of many soil bacteria, enabling them to thrive in fluctuating conditions commonly encountered in terrestrial habitats. Rhodococcus species are also noted for their potential in bioremediation applications, owing to their enzymatic capabilities that allow them to degrade a wide range of pollutants. While the specific metabolic pathways of R. ruber str. YYL are not detailed here, the strain likely exhibits similar versatility, reflecting the broader functional traits observed in the genus. Overall, the ecological role of R. ruber str. YYL in soil environments may extend beyond nutrient cycling to include interactions with other soil microorganisms, thereby influencing soil health and ecosystem resilience. Understanding the specific contributions of this strain to soil microbiomes could provide insights into its potential applications in environmental biotechnology and sustainable agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber str. YYL

Accession NumberNZ_CP024892.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
(fe-s)-binding proteinCSW53_RS26460Not Available+141 - 74621317.6
nramp family divalent metal transporterCSW53_RS28430Not Available-997 - 145116456.0
hypothetical proteinCSW53_RS26475Not Available-2037 - 240212722.7
nramp family divalent metal transporterCSW53_RS26480Not Available+2539 - 412057941.7
nramp family divalent metal transporterCSW53_RS26485Not Available+4117 - 448213105.5
o-methyltransferaseCSW53_RS26490Not Available+4560 - 517722214.2
sdr family oxidoreductaseCSW53_RS26495Not Available-5231 - 601626895.6
tn3 family transposaseCSW53_RS26500Not Available-6090 - 9083110811.0
nramp family divalent metal transporterCSW53_RS26505Not Available-9177 - 949711229.7
aldehyde dehydrogenase family proteinCSW53_RS26510Not Available-9760 - 1114849698.3

Displaying genes 1 – 10 of 211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites