Pseudonocardia abyssalis KRD168

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia abyssalis KRD168 is a rod-shaped bacterium classified within the genus Pseudonocardia. This species has been isolated from sediments in the Southern Ocean, indicating its adaptation to a specific marine environment. Pseudonocardia abyssalis KRD168 is characterized by having two replicons, which suggests a complex genomic structure that may contribute to its ecological versatility and metabolic capabilities. The genome of this bacterium is represented by two accessions: JADQDK010000001.1 and JADQDK010000002.1. These accessions provide valuable resources for further genomic analysis and studies into the functional potential of this organism. The habitat of Pseudonocardia abyssalis KRD168 in the Southern Ocean sediments highlights its role in biogeochemical processes in marine ecosystems. As a member of the Pseudonocardia genus, this bacterium may be involved in the degradation of organic matter and the cycling of nutrients within its sedimentary environment. Understanding the specific functions and interactions of Pseudonocardia abyssalis KRD168 within its ecosystem could provide insights into microbial diversity and the ecological roles played by sediment-dwelling microorganisms in the Southern Ocean.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia abyssalis
StrainKRD168

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediments; Southern Ocean
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia abyssalis KRD168, Complete Genome

Gene Summary

Adenine Count

839379 bp

Thymine Count

826802 bp

Guanine Count

2301807 bp

Cytosine Count

2305241 bp

Genome Length

6273229 bp

Protein-coding Genes

6054 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3566 domain-containing proteinI4I81_23895P9WMA6Negative4925725 - 492643223904.4
dna gyrase subunit aI4I81_23900P9WG46Negative4926781 - 492928892384.6
dna topoisomerase (atp-hydrolyzing) subunit bI4I81_23905A0QNE0Negative4929315 - 493129772942.6
duf721 domain-containing proteinI4I81_23910Q0SAG3Negative4931557 - 493214120896.6
dna replication/repair protein recfI4I81_23915A4F5N5Negative4932232 - 493336240409.5
decarboxylating 6-phosphogluconate dehydrogenaseI4I81_23920G5EBD7Negative4933374 - 493431832565.6
dna polymerase iii subunit betaI4I81_23925A0QND6Negative4934366 - 493553840716.6
chromosomal replication initiator protein dnaaI4I81_23930Q0SAG7Negative4936289 - 493796261259.5
50s ribosomal protein l34I4I81_23935A4QIE6Positive4938381 - 49385245481.78
ribonuclease p protein componentI4I81_23940B1VPE8Positive4938538 - 493890312723.8

Displaying genes 4781 – 4790 of 6155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.