Pseudonocardia abyssalis KRD168

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia abyssalis KRD168 is a rod-shaped bacterium classified within the genus Pseudonocardia. This species has been isolated from sediments in the Southern Ocean, indicating its adaptation to a specific marine environment. Pseudonocardia abyssalis KRD168 is characterized by having two replicons, which suggests a complex genomic structure that may contribute to its ecological versatility and metabolic capabilities. The genome of this bacterium is represented by two accessions: JADQDK010000001.1 and JADQDK010000002.1. These accessions provide valuable resources for further genomic analysis and studies into the functional potential of this organism. The habitat of Pseudonocardia abyssalis KRD168 in the Southern Ocean sediments highlights its role in biogeochemical processes in marine ecosystems. As a member of the Pseudonocardia genus, this bacterium may be involved in the degradation of organic matter and the cycling of nutrients within its sedimentary environment. Understanding the specific functions and interactions of Pseudonocardia abyssalis KRD168 within its ecosystem could provide insights into microbial diversity and the ecological roles played by sediment-dwelling microorganisms in the Southern Ocean.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia abyssalis
StrainKRD168

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediments; Southern Ocean
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia abyssalis KRD168, Complete Genome

Gene Summary

Adenine Count

4626 bp

Thymine Count

4269 bp

Guanine Count

12104 bp

Cytosine Count

11761 bp

Genome Length

32760 bp

Protein-coding Genes

32 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive4485621 - 4485663Not Available
IntegraseI4I81_21620Q7ZAM5Positive4485736 - 448665034291.2
Dna primase/polymeraseI4I81_21625Not AvailablePositive4487152 - 448812335332.4
RecaI4I81_21630Not AvailablePositive4488215 - 448934541430.5
hypothetical proteinI4I81_21635Not AvailablePositive4489638 - 44897995944.13
Putative terminase large subunitI4I81_21640Not AvailableNegative4490971 - 449157321196.6
TransposaseI4I81_21645P35883Negative4491736 - 449302247087.4
Terminase large subunitI4I81_21650Not AvailableNegative4492985 - 449386332608.2
hypothetical proteinI4I81_21655Not AvailableNegative4493826 - 44941199988.85
Portal proteinI4I81_21660Q9ZXB2Positive4494158 - 449536343294.2

Displaying genes 1 – 10 of 6155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.