Pseudonocardia abyssalis KRD168

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia abyssalis KRD168 is a rod-shaped bacterium classified within the genus Pseudonocardia. This species has been isolated from sediments in the Southern Ocean, indicating its adaptation to a specific marine environment. Pseudonocardia abyssalis KRD168 is characterized by having two replicons, which suggests a complex genomic structure that may contribute to its ecological versatility and metabolic capabilities. The genome of this bacterium is represented by two accessions: JADQDK010000001.1 and JADQDK010000002.1. These accessions provide valuable resources for further genomic analysis and studies into the functional potential of this organism. The habitat of Pseudonocardia abyssalis KRD168 in the Southern Ocean sediments highlights its role in biogeochemical processes in marine ecosystems. As a member of the Pseudonocardia genus, this bacterium may be involved in the degradation of organic matter and the cycling of nutrients within its sedimentary environment. Understanding the specific functions and interactions of Pseudonocardia abyssalis KRD168 within its ecosystem could provide insights into microbial diversity and the ecological roles played by sediment-dwelling microorganisms in the Southern Ocean.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia abyssalis
StrainKRD168

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediments; Southern Ocean
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia abyssalis KRD168, Complete Genome

Gene Summary

Adenine Count

839379 bp

Thymine Count

826802 bp

Guanine Count

2301807 bp

Cytosine Count

2305241 bp

Genome Length

6273229 bp

Protein-coding Genes

6054 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dipeptidaseI4I81_20310B2KZE7Positive4235541 - 423689646725.0
atp-binding cassette domain-containing proteinI4I81_20315P32010Positive4236922 - 423788434066.8
abc transporter permeaseI4I81_20320P48278Positive4237881 - 423864527182.4
helix-turn-helix domain-containing proteinI4I81_20325P32010Negative4238767 - 42388744102.99
abc-f family atp-binding cassette domain-containing proteinI4I81_20330O06476Negative4239102 - 424090465043.6
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseI4I81_20335A4F7X3Negative4240904 - 424183631949.4
dha2 family efflux mfs transporter permease subunitI4I81_20340P9WG86Negative4241880 - 424339752313.1
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaI4I81_20345Q47SX4Negative4243464 - 424430329017.3
transglycosylase family proteinI4I81_20350H8EZH5Negative4244311 - 424600559191.4
tatd family hydrolaseI4I81_20355O08343Negative4246304 - 424711929632.8

Displaying genes 4081 – 4090 of 6155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.