Pseudonocardia abyssalis KRD168

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia abyssalis KRD168 is a rod-shaped bacterium classified within the genus Pseudonocardia. This species has been isolated from sediments in the Southern Ocean, indicating its adaptation to a specific marine environment. Pseudonocardia abyssalis KRD168 is characterized by having two replicons, which suggests a complex genomic structure that may contribute to its ecological versatility and metabolic capabilities. The genome of this bacterium is represented by two accessions: JADQDK010000001.1 and JADQDK010000002.1. These accessions provide valuable resources for further genomic analysis and studies into the functional potential of this organism. The habitat of Pseudonocardia abyssalis KRD168 in the Southern Ocean sediments highlights its role in biogeochemical processes in marine ecosystems. As a member of the Pseudonocardia genus, this bacterium may be involved in the degradation of organic matter and the cycling of nutrients within its sedimentary environment. Understanding the specific functions and interactions of Pseudonocardia abyssalis KRD168 within its ecosystem could provide insights into microbial diversity and the ecological roles played by sediment-dwelling microorganisms in the Southern Ocean.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia abyssalis
StrainKRD168

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediments; Southern Ocean
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia abyssalis KRD168, Complete Genome

Gene Summary

Adenine Count

839379 bp

Thymine Count

826802 bp

Guanine Count

2301807 bp

Cytosine Count

2305241 bp

Genome Length

6273229 bp

Protein-coding Genes

6054 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
voc family proteinI4I81_19760Q02481Positive4128744 - 412913313883.4
maleylpyruvate isomerase family mycothiol-dependent enzymeI4I81_19765Not AvailableNegative4129138 - 412977022459.6
isochorismatase family proteinI4I81_19770C5NU54Positive4129880 - 413048221229.7
marr family transcriptional regulatorI4I81_19775Not AvailablePositive4130603 - 413140928733.0
redox-regulated atpase ychfI4I81_19780Q9CP90Negative4131413 - 413248638298.8
hypothetical proteinI4I81_19785Not AvailablePositive4132736 - 413332618809.8
response regulator transcription factorI4I81_19790Q02540Negative4133333 - 413399824509.5
hamp domain-containing histidine kinaseI4I81_19795P0A4I7Negative4133995 - 413546452144.2
hypothetical proteinI4I81_19800Not AvailableNegative4135604 - 413590610031.3
dna-3-methyladenine glycosylase 2 family proteinI4I81_19805P9WJW2Positive4136034 - 413750651503.9

Displaying genes 3971 – 3980 of 6155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.