Pseudonocardia abyssalis KRD168

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia abyssalis KRD168 is a rod-shaped bacterium classified within the genus Pseudonocardia. This species has been isolated from sediments in the Southern Ocean, indicating its adaptation to a specific marine environment. Pseudonocardia abyssalis KRD168 is characterized by having two replicons, which suggests a complex genomic structure that may contribute to its ecological versatility and metabolic capabilities. The genome of this bacterium is represented by two accessions: JADQDK010000001.1 and JADQDK010000002.1. These accessions provide valuable resources for further genomic analysis and studies into the functional potential of this organism. The habitat of Pseudonocardia abyssalis KRD168 in the Southern Ocean sediments highlights its role in biogeochemical processes in marine ecosystems. As a member of the Pseudonocardia genus, this bacterium may be involved in the degradation of organic matter and the cycling of nutrients within its sedimentary environment. Understanding the specific functions and interactions of Pseudonocardia abyssalis KRD168 within its ecosystem could provide insights into microbial diversity and the ecological roles played by sediment-dwelling microorganisms in the Southern Ocean.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia abyssalis
StrainKRD168

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediments; Southern Ocean
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia abyssalis KRD168, Complete Genome

Gene Summary

Adenine Count

839379 bp

Thymine Count

826802 bp

Guanine Count

2301807 bp

Cytosine Count

2305241 bp

Genome Length

6273229 bp

Protein-coding Genes

6054 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-quinone oxidoreductase subunit nI4I81_11660B1VSR0Negative2476773 - 247817947996.8
nadh-quinone oxidoreductase subunit mI4I81_11665P50974Negative2478185 - 247966651593.5
nadh-quinone oxidoreductase subunit lI4I81_11670Q9I0J1Negative2479670 - 248154761775.1
nadh-quinone oxidoreductase subunit kI4I81_11675Q00244Negative2481549 - 248185410629.5
nadh-quinone oxidoreductase subunit jI4I81_11680O63849Negative2481851 - 248241119812.3
nadh-quinone oxidoreductase subunit hI4I81_11685Q2RJU3Negative2482413 - 248336933326.6
hypothetical proteinI4I81_11690Not AvailableNegative2483366 - 248448439342.6
nadh-quinone oxidoreductase subunit aI4I81_11695Q39QA7Negative2484481 - 248483412971.2
duf305 domain-containing proteinI4I81_11700Not AvailableNegative2484956 - 248559721928.1
hypothetical proteinI4I81_11705Not AvailableNegative2485657 - 248604312995.3

Displaying genes 2351 – 2360 of 6155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.