Pseudonocardia abyssalis KRD168

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia abyssalis KRD168 is a rod-shaped bacterium classified within the genus Pseudonocardia. This species has been isolated from sediments in the Southern Ocean, indicating its adaptation to a specific marine environment. Pseudonocardia abyssalis KRD168 is characterized by having two replicons, which suggests a complex genomic structure that may contribute to its ecological versatility and metabolic capabilities. The genome of this bacterium is represented by two accessions: JADQDK010000001.1 and JADQDK010000002.1. These accessions provide valuable resources for further genomic analysis and studies into the functional potential of this organism. The habitat of Pseudonocardia abyssalis KRD168 in the Southern Ocean sediments highlights its role in biogeochemical processes in marine ecosystems. As a member of the Pseudonocardia genus, this bacterium may be involved in the degradation of organic matter and the cycling of nutrients within its sedimentary environment. Understanding the specific functions and interactions of Pseudonocardia abyssalis KRD168 within its ecosystem could provide insights into microbial diversity and the ecological roles played by sediment-dwelling microorganisms in the Southern Ocean.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia abyssalis
StrainKRD168

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediments; Southern Ocean
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia abyssalis KRD168, Complete Genome

Gene Summary

Adenine Count

839379 bp

Thymine Count

826802 bp

Guanine Count

2301807 bp

Cytosine Count

2305241 bp

Genome Length

6273229 bp

Protein-coding Genes

6054 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyrroloquinoline-quinone synthase pqqcI4I81_05210B2VL12Negative1096461 - 109721628421.4
pyrroloquinoline quinone biosynthesis protein pqqbI4I81_05215A1K4P9Negative1097213 - 109811232478.6
pyrroloquinoline quinone precursor peptide pqqaI4I81_05220Not AvailableNegative1098186 - 10982783387.9
pqq-dependent dehydrogenase, methanol/ethanol familyI4I81_05225A8R3S4Negative1098324 - 110001261376.4
copper oxidaseI4I81_05230Not AvailableNegative1100044 - 110050516086.9
hypothetical proteinI4I81_05235Not AvailablePositive1100943 - 110171628422.9
ribonucleotide-diphosphate reductase subunit betaI4I81_05240A0QPD3Negative1101703 - 110246427857.2
duf1232 domain-containing proteinI4I81_05245Not AvailableNegative1102614 - 110297013222.7
fkbp-type peptidyl-prolyl cis-trans isomeraseI4I81_05250P28725Negative1103140 - 110351412901.3
mfs transporterI4I81_05255P46105Positive1103655 - 110506447505.6

Displaying genes 1061 – 1070 of 6155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.