Cetobacterium somerae

Gram-negativeAnaerobe

Kingdom

Fusobacteriati

Phylum

Fusobacteriota

Class

Fusobacteriia

Order

Fusobacteriales

Family

Fusobacteriaceae

Genus

Cetobacterium

Description

Cetobacterium somerae is a Gram-negative, anaerobic bacterium characterized by its adaptation to low-oxygen environments. It possesses a total of eight replicons, which are essential for its genetic stability and replication processes. The presence of multiple replicons can play a role in the organism's ability to thrive under anaerobic conditions, as it may facilitate the management of genetic material in fluctuating environments. In terms of ecological role, C. somerae is often found in the gastrointestinal tracts of various fish species. Its anaerobic nature suggests it plays a significant role in the fermentation processes occurring in these environments, contributing to the complex microbial ecosystems present in aquatic habitats. The ability to survive and function effectively in such anoxic conditions allows C. somerae to participate in nutrient cycling within the gut microbiome of fish, which may have implications for the health and nutrition of its hosts. Furthermore, the genetic diversity indicated by the eight different accessions (CP173065.2, CP173062.2, CP173060.2, CP173070.2, CP173063.2, CP173069.2, CP173066.2, and CP173064.2) suggests that there may be various strains of C. somerae adapted to specific environments or host species. This diversity could be crucial for understanding the ecological interactions and potential applications of this bacterium in aquaculture and environmental microbiology. Overall, C. somerae's traits highlight its importance in anaerobic ecosystems and its role in the digestive processes of aquatic organisms.

Taxonomy

KingdomFusobacteriati
PhylumFusobacteriota
ClassFusobacteriia
OrderFusobacteriales
FamilyFusobacteriaceae
GenusCetobacterium
SpeciesCetobacterium somerae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

682145 bp

Thymine Count

684279 bp

Guanine Count

285647 bp

Cytosine Count

286849 bp

Genome Length

1938920 bp

Protein-coding Genes

1774 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ankyrin repeat domain-containing proteinACIE8Z_09985Q9J5H9Negative145309 - 14610929995.4
translational gtpase typaACIE8Z_09980Q9ZLZ3Negative146129 - 14793467267.1
trna pseudouridine(55) synthase trubACIE8Z_09975Q8R5X8Negative147953 - 14881032477.2
putative glycoside hydrolaseACIE8Z_09970Not AvailableNegative148879 - 15049562127.3
m16 family metallopeptidaseACIE8Z_09960P45181Positive150631 - 153408106522.0
duf1904 domain-containing proteinACIE8Z_09955Not AvailablePositive153410 - 15373912667.9
shikimate kinaseACIE8Z_09950Q8RF94Positive153745 - 15426319735.8
sdr family nad(p)-dependent oxidoreductaseACIE8Z_09945Q9P7B4Positive154276 - 15504927752.4
formate/nitrite transporter family proteinACIE8Z_09940O05399Negative155090 - 15585127258.9
branched-chain amino acid transport system ii carrier proteinACIE8Z_09935O34545Negative155995 - 15718841734.6

Displaying genes 141 – 150 of 3062 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

354 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002143menaquinone-7C46H64O2Chemical structure of menaquinone-7Not available
Average648.9992Da
Monoisotopic648.4906313Da

Displaying 1–10 of 354 metabolites

Health Effects

No health effects information available for this bacterium.