Cetobacterium somerae ATCC BAA-474

Gram-negativeAnaerobe

Kingdom

Fusobacteriati

Phylum

Fusobacteriota

Class

Fusobacteriia

Order

Fusobacteriales

Family

Fusobacteriaceae

Genus

Cetobacterium

Description

Cetobacterium somerae ATCC BAA-474 is a Gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, indicating its preference for moderate temperatures. This microbe is a heterotroph, relying on organic compounds for its energy and carbon needs, which it obtains primarily from its environment. As an obligate anaerobe, Cetobacterium somerae can only grow in environments devoid of oxygen, making it particularly adaptable to specific niches within its habitats. Cetobacterium somerae is predominantly found in the gastrointestinal tracts of various aquatic organisms, especially freshwater fish. This suggests a significant ecological role, as it assists in the digestion of complex carbohydrates and proteins within its host's gut. The presence of such bacteria in the digestive systems of fish indicates a symbiotic relationship that enhances nutrient absorption and overall health of the host.The significance of Cetobacterium somerae extends beyond its role in fish digestion. Research has highlighted its potential in aquaculture, as it may contribute to the prevention of pathogenic bacteria, thereby promoting fish health. Furthermore, this microbe demonstrates unique metabolic capabilities, including the production of short-chain fatty acids, which serve as essential energy sources for the host.Studies also indicate that Cetobacterium somerae is of interest in biotechnology and environmental monitoring due to its ability to degrade various organic compounds. This characteristic could be harnessed for applications in waste treatment and bioremediation, showcasing its versatility and value in both natural ecosystems and industrial processes.

Taxonomy

KingdomFusobacteriati
PhylumFusobacteriota
ClassFusobacteriia
OrderFusobacteriales
FamilyFusobacteriaceae
GenusCetobacterium
SpeciesCetobacterium somerae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cetobacterium somerae ATCC BAA-474

Accession NumberAXZF00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2975 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+2 - 1341Not Available
initiator repb proteinHMPREF0202_00001Not Available+65 - 123446488.9
Ncrna_class:ribozymeNot AvailableNot Available+180 - 324Not Available
Ncrna_class:autocatalytically_spliced_intronNot AvailableNot Available+352 - 436Not Available
Ncrna_class:srp_rnaNot AvailableNot Available+791 - 889Not Available
Ncrna_class:autocatalytically_spliced_intronNot AvailableNot Available+1766 - 1850Not Available
hypothetical proteinHMPREF0202_00002Not Available+2467 - 26617254.15
hypothetical proteinHMPREF0202_00003Not Available+2658 - 350932422.7
hypothetical proteinHMPREF0202_00004Not Available+3788 - 404310013.0
cell cycle protein, ftsw/roda/spove familyHMPREF0202_00005Not Available+4098 - 531545483.1

Displaying genes 1 – 10 of 3015 in total

Pathways

129 pathways

Metabolites

488 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 488 metabolites