Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium ammonificans SHINM13 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This species is part of the Flavobacterium genus, notable for its role in various ecological processes, including the degradation of organic matter. The strain has a single replicon, indicating a streamlined genomic organization that is typical for many bacteria within its genus. The genomic data for Flavobacterium ammonificans SHINM13 is accessible under the accession number AP025185.1, providing a resource for further genomic studies and analysis. In the ecological context, the motility enabled by flagella may enhance the bacterium's ability to navigate its environment, potentially allowing it to access nutrient-rich niches or evade unfavorable conditions. This capability could play a significant role in its survival and function within microbial communities, particularly in environments where organic matter decomposition is crucial. The ecological implications of such traits highlight the importance of Flavobacterium ammonificans SHINM13 in nutrient cycling and organic matter turnover in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium ammonificans
StrainSHINM13, Flavobacterium Strains: 1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1, Complete Genome

Gene Summary

Adenine Count

785786 bp

Thymine Count

795241 bp

Guanine Count

413838 bp

Cytosine Count

414543 bp

Genome Length

2409408 bp

Protein-coding Genes

2093 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytidine deaminaseSHINM13_09550Q9KD53Negative1158250 - 115873217623.4
hypothetical proteinSHINM13_09560Not AvailableNegative1158791 - 115996343390.9
gliding motility lipoprotein gldjSHINM13_09570Q8R0F3Positive1160342 - 116203064111.8
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseSHINM13_09580P96613Positive1162094 - 116337747573.9
glycosyl hydrolase family 16SHINM13_09590P45798Positive1163410 - 116417428179.1
glucosylceramidaseSHINM13_09600Q4WBR2Positive1164341 - 116574752003.1
glycosyl hydrolaseSHINM13_09610Q56078Positive1165828 - 116805382087.3
dna mismatch repair protein muttSHINM13_09620Q58549Positive1168225 - 116898028978.2
hypothetical proteinSHINM13_09630A0A6C7EEG6Negative1169032 - 117076865270.2
Trna-valNot AvailableNot AvailablePositive1170943 - 1171020Not Available

Displaying genes 981 – 990 of 2145 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.