Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium ammonificans SHINM13 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This species is part of the Flavobacterium genus, notable for its role in various ecological processes, including the degradation of organic matter. The strain has a single replicon, indicating a streamlined genomic organization that is typical for many bacteria within its genus. The genomic data for Flavobacterium ammonificans SHINM13 is accessible under the accession number AP025185.1, providing a resource for further genomic studies and analysis. In the ecological context, the motility enabled by flagella may enhance the bacterium's ability to navigate its environment, potentially allowing it to access nutrient-rich niches or evade unfavorable conditions. This capability could play a significant role in its survival and function within microbial communities, particularly in environments where organic matter decomposition is crucial. The ecological implications of such traits highlight the importance of Flavobacterium ammonificans SHINM13 in nutrient cycling and organic matter turnover in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium ammonificans
StrainSHINM13, Flavobacterium Strains: 1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1, Complete Genome

Gene Summary

Adenine Count

785786 bp

Thymine Count

795241 bp

Guanine Count

413838 bp

Cytosine Count

414543 bp

Genome Length

2409408 bp

Protein-coding Genes

2093 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exopolyphosphataseSHINM13_17550Q8RF47Negative2017624 - 201851433277.4
polyphosphate kinaseSHINM13_17560Q8ZCX2Negative2018558 - 202070582357.2
phosphohistidine phosphataseSHINM13_17570Q94BY1Negative2020710 - 202119518432.2
pyridoxine/pyridoxamine 5'-phosphate oxidaseSHINM13_17580A5FB76Negative2021363 - 202200724695.1
ribonuclease zSHINM13_17590Q89ZN1Negative2022021 - 202292634305.2
hypothetical proteinSHINM13_17600Not AvailableNegative2022949 - 20231527618.59
hypothetical proteinSHINM13_17610Not AvailableNegative2023155 - 202348712181.6
aspartate carbamoyltransferaseSHINM13_17620A5FB79Negative2023551 - 202447734197.5
bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferaseSHINM13_17630B1XP88Negative2024519 - 202505820730.1
abc-f family atpaseSHINM13_17640O31716Negative2025169 - 202678561174.2

Displaying genes 1791 – 1800 of 2145 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.