Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium ammonificans SHINM13 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This species is part of the Flavobacterium genus, notable for its role in various ecological processes, including the degradation of organic matter. The strain has a single replicon, indicating a streamlined genomic organization that is typical for many bacteria within its genus. The genomic data for Flavobacterium ammonificans SHINM13 is accessible under the accession number AP025185.1, providing a resource for further genomic studies and analysis. In the ecological context, the motility enabled by flagella may enhance the bacterium's ability to navigate its environment, potentially allowing it to access nutrient-rich niches or evade unfavorable conditions. This capability could play a significant role in its survival and function within microbial communities, particularly in environments where organic matter decomposition is crucial. The ecological implications of such traits highlight the importance of Flavobacterium ammonificans SHINM13 in nutrient cycling and organic matter turnover in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium ammonificans
StrainSHINM13, Flavobacterium Strains: 1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1, Complete Genome

Gene Summary

Adenine Count

785786 bp

Thymine Count

795241 bp

Guanine Count

413838 bp

Cytosine Count

414543 bp

Genome Length

2409408 bp

Protein-coding Genes

2093 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gntr family transcriptional regulatorSHINM13_13970O06747Positive1615183 - 161610335301.7
1,4-dihydroxy-2-naphthoyl-coa synthaseSHINM13_13980P9WNP4Positive1616241 - 161708031159.1
1,4-dihydroxy-2-naphthoate octaprenyltransferaseSHINM13_13990P32166Positive1617150 - 161810034880.1
hypothetical proteinSHINM13_14000Not AvailablePositive1618176 - 161937544941.9
o-succinylbenzoate synthaseSHINM13_14010Q6ARP5Positive1619448 - 162043737446.8
fused isobutyryl-coa mutaseSHINM13_14020Q5KUG0Positive1620550 - 1623975127722.0
penicillin-binding proteinSHINM13_14030P32959Negative1624636 - 162583545854.2
alanine dehydrogenaseSHINM13_14040Q9SMZ4Positive1626060 - 162727745319.3
hypothetical proteinSHINM13_14050Not AvailablePositive1627389 - 16275596646.17
tonb-dependent receptorSHINM13_14060P17315Negative1627628 - 163008791919.5

Displaying genes 1431 – 1440 of 2145 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.