Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium ammonificans SHINM13 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This species is part of the Flavobacterium genus, notable for its role in various ecological processes, including the degradation of organic matter. The strain has a single replicon, indicating a streamlined genomic organization that is typical for many bacteria within its genus. The genomic data for Flavobacterium ammonificans SHINM13 is accessible under the accession number AP025185.1, providing a resource for further genomic studies and analysis. In the ecological context, the motility enabled by flagella may enhance the bacterium's ability to navigate its environment, potentially allowing it to access nutrient-rich niches or evade unfavorable conditions. This capability could play a significant role in its survival and function within microbial communities, particularly in environments where organic matter decomposition is crucial. The ecological implications of such traits highlight the importance of Flavobacterium ammonificans SHINM13 in nutrient cycling and organic matter turnover in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium ammonificans
StrainSHINM13, Flavobacterium Strains: 1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1, Complete Genome

Gene Summary

Adenine Count

785786 bp

Thymine Count

795241 bp

Guanine Count

413838 bp

Cytosine Count

414543 bp

Genome Length

2409408 bp

Protein-coding Genes

2093 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleaseSHINM13_12010Q4L3E5Positive1401455 - 140177512660.8
membrane proteinSHINM13_12020Not AvailableNegative1401837 - 140235219682.8
carbamoyl-phosphate synthase (glutamine-hydrolyzing)SHINM13_12030O28994Positive1402841 - 1405696105813.0
merr family transcriptional regulatorSHINM13_12040Q50900Positive1405843 - 140673934878.5
phytoene dehydrogenaseSHINM13_12050A0A0A1GKA2Positive1406763 - 140823855291.8
phytoene synthaseSHINM13_12060P54977Positive1408240 - 140907932220.7
beta-carotene hydroxylaseSHINM13_12070P21688Positive1409182 - 140954714609.0
hypothetical proteinSHINM13_12080Not AvailablePositive1409552 - 141001317993.9
deoxyribodipyrimidine photo-lyaseSHINM13_12090A9CJC9Positive1410013 - 141130850553.6
gtp cyclohydrolase 1SHINM13_12100B2RIJ1Negative1411391 - 141199022805.7

Displaying genes 1231 – 1240 of 2145 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.