Citrobacter freundii strain NCTC13639

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain NCTC13639 is a Gram-negative, rod-shaped bacterium that thrives in various habitats, including hospital sewage, the intestinal tract, sewage, soil, and surface waters. It is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, and possesses true flagella, which facilitate its motility. This strain has a single replicon and is known to infect a diverse array of hosts, including humans (Homo sapiens), various animals such as rabbits (Oryctolagus cuniculus), tilapia, domestic dogs (Canis lupus familiaris), and cats (Felis catus), as well as amphibians and fish. The bacterium is recognized for being an opportunistic pathogen, responsible for infections in humans and animals, particularly affecting the urinary and respiratory tracts. In horses, it can lead to respiratory tract and wound infections, while in dogs and cats, it is associated with respiratory tract infections and pleuritis. C. freundii strain NCTC13639 is nonsporulating, which may influence its ecological persistence and pathogenicity. The wide range of hosts and environments it occupies suggests a significant role in both clinical settings and natural ecosystems. The bacterium's presence in hospital sewage underlines its relevance in healthcare, where it can pose infection risks, particularly in immunocompromised patients. Understanding its ecological niche and pathogenic potential is essential for managing infections and preventing outbreaks in both humans and animals.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain NCTC13639

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain NCTC13639
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain NCTC13639 genome assembly, contig:

Gene Summary

Adenine Count

1365926 bp

Thymine Count

1362255 bp

Guanine Count

1468521 bp

Cytosine Count

1463287 bp

Genome Length

5659989 bp

Protein-coding Genes

5404 genes

Non-Coding Genes

644 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein of uncharacterised function, duf462NCTC13639_01822Not AvailablePositive1709297 - 170984521334.9
yfcl proteinNCTC13639_01823Not AvailablePositive1709878 - 17101539969.63
5-methylaminomethyl-2-thiouridine methyltransferaseNCTC13639_01824Not AvailableNegative1710268 - 171226873214.9
3-oxoacyl-(acyl carrier protein) synthase iNCTC13639_01825Not AvailablePositive1712428 - 171364242257.4
major facilitator superfamily proteinNCTC13639_01826Not AvailablePositive1713856 - 171503440650.8
flagella biosynthesis regulatorNCTC13639_01827Not AvailableNegative1715031 - 171603537149.9
erythronate-4-phosphate dehydrogenaseNCTC13639_01828Not AvailablePositive1716141 - 171727741059.5
putative semialdehyde dehydrogenaseNCTC13639_01829Not AvailablePositive1717346 - 171835936450.2
trna pseudouridine synthase aNCTC13639_01830Not AvailablePositive1718359 - 171917130382.2
snare associated golgi proteinNCTC13639_01831Not AvailablePositive1719196 - 171985524442.6

Displaying genes 2321 – 2330 of 6048 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total