Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug effflux mfs transporter | FAP39_04535 | Not Available | Positive | 924926 - 926143 | 43040.6 |
| imma/irre family metallo-endopeptidase | FAP39_04540 | Not Available | Positive | 926304 - 927704 | 51704.5 |
| alpha/beta hydrolase | FAP39_04545 | Not Available | Positive | 927738 - 928583 | 30288.8 |
| duf465 domain-containing protein | FAP39_04550 | Not Available | Negative | 928568 - 928804 | 9259.87 |
| choline dehydrogenase | FAP39_04555 | Not Available | Negative | 928905 - 930563 | 60072.2 |
| betaine-aldehyde dehydrogenase | FAP39_04560 | Not Available | Negative | 930647 - 932098 | 51104.7 |
| transcriptional regulator beti | FAP39_04565 | Not Available | Positive | 932399 - 933007 | 23164.8 |
| choline-sulfatase | FAP39_04570 | Not Available | Negative | 933127 - 934635 | 57331.2 |
| dmt family transporter | FAP39_04575 | Not Available | Negative | 934736 - 935641 | 32266.8 |
| amino acid transporter | FAP39_04580 | Not Available | Negative | 935742 - 936338 | 21019.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
