Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | FAP39_04485 | Not Available | Negative | 914237 - 914842 | 21483.7 |
| methylmalonyl-coa mutase | FAP39_04490 | Not Available | Negative | 915056 - 917182 | 77171.7 |
| hypothetical protein | FAP39_04495 | Not Available | Negative | 917193 - 918128 | 34164.8 |
| duf4174 domain-containing protein | FAP39_04500 | Not Available | Positive | 918240 - 918692 | 16961.7 |
| acetyl/propionyl/methylcrotonyl-coa carboxylase subunit alpha | FAP39_04505 | Not Available | Negative | 918777 - 920822 | 74255.5 |
| hypothetical protein | FAP39_04510 | Not Available | Negative | 920954 - 921163 | 6798.08 |
| hypothetical protein | FAP39_04515 | Not Available | Negative | 921507 - 921863 | 13535.9 |
| acetolactate synthase | FAP39_04520 | Not Available | Negative | 922297 - 922707 | 14981.8 |
| hypothetical protein | FAP39_04525 | Not Available | Negative | 922700 - 923056 | 13284.1 |
| acyl-coa carboxylase subunit beta | FAP39_04530 | Not Available | Negative | 923221 - 924753 | 55900.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
