Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein-releasing abc transporter permease subunit | FAP39_04435 | Not Available | Negative | 902947 - 904233 | 46431.8 |
| proline--trna ligase | FAP39_04440 | Not Available | Negative | 904417 - 905754 | 50336.0 |
| ai-2e family transporter | FAP39_04445 | Not Available | Positive | 905972 - 907039 | 38508.6 |
| chromosomal replication initiator dnaa | FAP39_04450 | Not Available | Positive | 907041 - 907712 | 24317.6 |
| rna degradosome polyphosphate kinase | FAP39_04455 | Not Available | Positive | 907805 - 909979 | 81313.6 |
| ppx/gppa family phosphatase | FAP39_04460 | Not Available | Positive | 910032 - 911573 | 57226.8 |
| hypothetical protein | FAP39_04465 | Not Available | Negative | 911619 - 911975 | 12861.6 |
| endonuclease | FAP39_04470 | Not Available | Negative | 912013 - 913038 | 38210.2 |
| molecular chaperone djia | FAP39_04475 | Not Available | Negative | 913038 - 913718 | 24950.9 |
| n-acetyltransferase | FAP39_04480 | Not Available | Negative | 913761 - 914240 | 17500.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
